Slide-seq: Optimal tool to quantify the expression pattern of a large number of transcripts (~5000) with a high spatial resolution (3-10 μm) on tissue sections.

Optimized tool for transcriptome analysis of a large number of individual cells based on a large spectrum of fluorophores, with excellent sensitivity, resolution, and speed. Spatiotemporal context is computationally reconstructed a posteriori.

smFISH: State-of-the-art tool for the precise quantification at a very high spatial resolution of a small (1-10) to large (10-10000) number of transcripts. Compatible with the study of whole-mount samples.